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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95106921_95107741_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95106921 - 95107741
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTCATA
Flanking Amino Acid:
SRHPAFGILAVTFCIEAVLG
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
62.7
42.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.4
0.84
0.6
84.3
23.8
Minor 5ss
37.5
-1.4
2.9
47
41.2
Minor BPS
70.6
0.64
1.7
82.43
32.9

Associated Gene:

Gene:
ADPRH
Ensembl Gene ID:
ENSAPLG00000007399
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007675
95099267 - 95107797
8531