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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95133965_95136505_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95133965 - 95136505
Intron Length:
2541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GGTTTCTCAATC
Flanking Amino Acid:
CDAPVSLSVTADFSEPNITS
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
93.4
0.98
0.5
92.6
17.4
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
61.8
0.35
1.5
67.98
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007688
95132681 - 95141810
9130