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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95136788_95138812_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95136788 - 95138812
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTCTGTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTTACTTACGT
Flanking Amino Acid:
GFVKSTSLLLTKTNDCIAPT
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
76
34.8
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
81.6
0.71
0.8
80
31.9
Minor 5ss
45.1
-0.5
3.1
60.9
38.3
Minor BPS
53
0.17
2.1
76.43
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007417
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007688
95132681 - 95141810
9130