About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95154040_95154245_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
95154040 - 95154245

Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGG|GTGAGGGGG

5'SS Class:
major

3'SS Sequence:
TGTGCCCCCGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GCCTCAT

U12 Branch Point Sequence:
TGACTCTTAGGT

Flanking Amino Acid:
WERLRDLWRRGDQQQYPEEA

Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
73.1
0.54
1.1
54.8
44.4

Major BPS
64.6
0.36
1.3
67.6
40.6

Major PPT
69.8
0.45
0.9
62.5
34.6

Minor 5ss
22.7
-3.1
3.2
20
37.8

Minor BPS
49
0
1.9
66.9
43.4

Associated Gene:

Gene:
TIMMDC1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

95148228 - 95154322
6095