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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95156899_95157529_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95156899 - 95157529
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTGGTTCTGACT
Flanking Amino Acid:
NDNIAQEIAERGRQFITEHL
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.8
81.8
38.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.5
0.48
1
62.5
44.3
Minor 5ss
35.9
-1.6
3
50.5
45.8
Minor BPS
49.3
0.03
1.8
70.55
41.2

Associated Gene:

Gene:
POGLUT1
Ensembl Gene ID:
ENSAPLG00000007460
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007771
95155742 - 95170374
14633