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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95160641_95161428_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95160641 - 95161428
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
TKNQAWKSEKDTLGKPPAKE
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.6
0.53
1.1
76.8
36.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
POGLUT1
Ensembl Gene ID:
ENSAPLG00000007460
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007771
95155742 - 95170374
14633