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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95161529_95162439_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95161529 - 95162439
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTCAT
U12 Branch Point Sequence:
TTGGCAATGACT
Flanking Amino Acid:
KISKGYFRGSRTSPERDPLI
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
60.9
0.27
1.3
63.1
44.4
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
49
0
2
73.39
43.4

Associated Gene:

Gene:
POGLUT1
Ensembl Gene ID:
ENSAPLG00000007460
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007771
95155742 - 95170374
14633