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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95162500_95164011_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95162500 - 95164011
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AACAATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATCATTTATT
Flanking Amino Acid:
RWDLMREDLKRSAEKWPWTK
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
65.2
0.34
1
59.4
44.8
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
51.5
0.13
1.9
69.95
40.7

Associated Gene:

Gene:
POGLUT1
Ensembl Gene ID:
ENSAPLG00000007460
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007771
95155742 - 95170374
14633