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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95167018_95167462_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95167018 - 95167462
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTGCCATATGT
Flanking Amino Acid:
YREHDCMFPARCSGVEHFLQ
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
78.5
0.64
0.8
72.6
31.8
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
48.7
-0
2.2
76.59
45.8

Associated Gene:

Gene:
POGLUT1
Ensembl Gene ID:
ENSAPLG00000007460
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007771
95155742 - 95170374
14633