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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95167607_95170067_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95167607 - 95170067
Intron Length:
2461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TTCTGGCTGATT
Flanking Amino Acid:
CVKENCSCHQSVWKQDLAPF
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
42.2
-0.5
2.6
67.18
44.3

Associated Gene:

Gene:
POGLUT1
Ensembl Gene ID:
ENSAPLG00000007460
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007771
95155742 - 95170374
14633