About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95237346_95240365_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
95237346 - 95240365
Intron Length:
3020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAGAT
U12 Branch Point Sequence:
CTGGTTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
69.7
37.9
Major BPS
52.7
0.07
1.1
48.6
36.6
Major PPT
73.5
0.53
1
69
40.8
Minor 5ss
44.6
-0.6
2.9
59.7
45.1
Minor BPS
62
0.37
1.4
65.7
41.8

Associated Gene:

Gene:
BCL9
Ensembl Gene ID:
ENSAPLG00000020628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032721
95237263 - 95250841
13579