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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95240673_95242216_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95240673 - 95242216
Intron Length:
1544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
VRNSPSGNTQSSPKSKQEVM
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
73.3
0.52
0.8
64.5
36.5
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
BCL9
Ensembl Gene ID:
ENSAPLG00000020628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032721
95237263 - 95250841
13579