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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95242534_95243455_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95242534 - 95243455
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCGCCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
AGGATAGTGATT
Flanking Amino Acid:
GTPNDDPEIKDCNSADHVKS
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
78.9
0.65
0.8
69.5
36.8
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
38.9
-0.7
2
50.9
37.2

Associated Gene:

Gene:
BCL9
Ensembl Gene ID:
ENSAPLG00000020628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032721
95237263 - 95250841
13579