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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95244215_95244650_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95244215 - 95244650
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGGAGT
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTGAT
U12 Branch Point Sequence:
GTGATGGCACGT
Flanking Amino Acid:
SKAERNTVPLNPQISALRTE
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
66.1
45
Major BPS
55.7
0.14
1.4
49.1
46.3
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
32.7
-2
3.5
45
45
Minor BPS
26.1
-1.7
2.4
40.31
41.8

Associated Gene:

Gene:
BCL9
Ensembl Gene ID:
ENSAPLG00000020628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032721
95237263 - 95250841
13579