About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95248474_95249723_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95248474 - 95249723
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
GTTACCTAAATC
Flanking Amino Acid:
PNLPPMNSVPGMGINSQNPR
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
72.9
0.51
0.8
65.6
36.1
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
62.9
0.38
1.7
71.9
39.4

Associated Gene:

Gene:
BCL9
Ensembl Gene ID:
ENSAPLG00000020628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032721
95237263 - 95250841
13579