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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95258120_95258325_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95258120 - 95258325
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTAATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
ADSSSPAEKARKLILYASHD
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58
40.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.9
86.5
31.5
Minor 5ss
27.8
-2.5
3.7
41.2
45.5
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
ACP6
Ensembl Gene ID:
ENSAPLG00000008285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008615
95250992 - 95264585
13594