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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_953316_954663_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
953316 - 954663
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAGAA
U12 Branch Point Sequence:
TGGACTAGAACC
Flanking Amino Acid:
LVENAVFLNELKAFVQAKEA
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
49.4
-0
1
46.7
36.4
Major PPT
82.5
0.73
0.9
77.3
37
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
47.3
-0.2
1.7
58.02
40.3

Associated Gene:

Gene:
TASOR2
Ensembl Gene ID:
ENSAPLG00000007418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007716
946048 - 979990
33943