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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95346993_95347845_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95346993 - 95347845
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATTTTCTTCATT
Flanking Amino Acid:
FMRKLFKDYEVRQYVVQVIF
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.5
0.82
0.7
81.5
28.8
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
68.7
0.67
1.7
85.57
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008568
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008969
95345223 - 95360814
15592