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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95347950_95349347_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95347950 - 95349347
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GGCTTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGATCTGTATTT
Flanking Amino Acid:
IFEILGVLNSSSRYFHWKLN
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
71.9
0.49
1
69.1
41.8
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
47.8
-0
2.2
69.05
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008568
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008969
95345223 - 95360814
15592