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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95350434_95353444_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95350434 - 95353444
Intron Length:
3011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGGTTATTGATG
Flanking Amino Acid:
DPFPILSPKHGILSIEQLIS
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
85.8
0.8
0.7
80.4
24.8
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
49.6
-0.1
1.7
55.48
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008568
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008969
95345223 - 95360814
15592