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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95353566_95353850_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95353566 - 95353850
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGAAT
U12 Branch Point Sequence:
GCAGGCCTAACT
Flanking Amino Acid:
CPYTYMSYFLRNVTDADILA
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
59.5
0.24
1.5
69.7
44.2
Major PPT
82.5
0.73
0.8
79.8
31.8
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
45.8
-0.2
2.2
62.1
47.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008568
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008969
95345223 - 95360814
15592