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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95357921_95358287_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95357921 - 95358287
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAACC
5'SS Class:
major
3'SS Sequence:
TTTGTATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CCTTTTGTATCT
Flanking Amino Acid:
LETADLHATKERIEYSKTFQ
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
66
38
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83
0.74
0.9
74.5
40.4
Minor 5ss
33
-1.9
3.2
44.5
43
Minor BPS
46.5
-0.1
2.2
66.05
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008568
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008969
95345223 - 95360814
15592