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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95359472_95360129_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95359472 - 95360129
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AATTACTTATTT
Flanking Amino Acid:
IRGLLITLTKFFYAISSSKS
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
60.1
0.4
1.8
76.87
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008568
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008969
95345223 - 95360814
15592