Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95364574_95364930_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

95364574 - 95364930

Intron Length:

357

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAA|GCAAATGTC

5'SS Class:

major

3'SS Sequence:

GCACAGTGAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTAAA

U12 Branch Point Sequence:

TGCACAGTGAGC

Flanking Amino Acid:

LLWQRLLHLEKVNHKPRICK

Intron Amino Acid Position:

339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

82.9

28.8

Major BPS

61.3

0.28

1.1

61.7

34.1

Major PPT

49.8

-0

1.1

41.6

Minor 5ss

-2.5

4.3

43.1

38.7

Minor BPS

38.5

-0.9

2.3

48.21

41.7

Associated Gene:

Gene:

PDZK1

Ensembl Gene ID:

ENSAPLG00000008849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046899

95363334 - 95368466

5133