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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95365236_95365489_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95365236 - 95365489
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TACTCCTTCACA
Flanking Amino Acid:
FYLRLEQNTGDHVIKDVDSK
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74.3
34.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.7
0.58
0.8
74.2
35.2
Minor 5ss
34.9
-1.7
2.9
42.4
38.2
Minor BPS
69.5
0.61
1.7
76.39
40.8

Associated Gene:

Gene:
PDZK1
Ensembl Gene ID:
ENSAPLG00000008849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037302
95362308 - 95368466
6159
ENSAPLT00000028959
95362308 - 95372596
10289
ENSAPLT00000024924
95363228 - 95368466
5239