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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95365686_95366624_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95365686 - 95366624
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTACTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTTCATGTACT
Flanking Amino Acid:
NDTHEEVVEKVKNSGNCVMF
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
75.6
0.58
1
70
40.4
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
53.5
0.19
2.1
79.56
41.6

Associated Gene:

Gene:
PDZK1
Ensembl Gene ID:
ENSAPLG00000008849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028959
95362308 - 95372596
10289
ENSAPLT00000024924
95363228 - 95368466
5239
ENSAPLT00000009218
95363334 - 95368466
5133
ENSAPLT00000037302
95362308 - 95368466
6159