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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95366741_95367652_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95366741 - 95367652
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCATGTATG
5'SS Class:
major
3'SS Sequence:
GGGTTGTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCTATT
Flanking Amino Acid:
IEGESSGRGDVDLSPQGAAA
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.2
74.1
42.4
Major BPS
100
1.24
0.5
100
0
Major PPT
63.1
0.3
1
54
45.8
Minor 5ss
35.3
-1.7
3.8
47.3
42.8
Minor BPS
53.4
0.19
2.1
81.8
39.4

Associated Gene:

Gene:
PDZK1
Ensembl Gene ID:
ENSAPLG00000008849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019089
95364328 - 95369517
5190