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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95366762_95367676_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95366762 - 95367676
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCATCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCTATT
Flanking Amino Acid:
GYGFSLKTIEGKKGLFLVDL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.9
77.8
35
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
53.4
0.19
2.1
81.8
39.4

Associated Gene:

Gene:
PDZK1
Ensembl Gene ID:
ENSAPLG00000008849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009218
95363334 - 95368466
5133
ENSAPLT00000046899
95363334 - 95368466
5133
ENSAPLT00000037302
95362308 - 95368466
6159
ENSAPLT00000028959
95362308 - 95372596
10289
ENSAPLT00000024924
95363228 - 95368466
5239