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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95367749_95368081_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
95367749 - 95368081
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCTTTGAG
5'SS Class:
weak_major
3'SS Sequence:
GCAATCACTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATCAC
U12 Branch Point Sequence:
GGAGCAATCACT
Flanking Amino Acid:
HHLSPTMGMKSLQPRLCYLV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.1
0
1.4
48.7
44.8
Major BPS
58.2
0.2
1.1
61.4
34.4
Major PPT
63.1
0.3
1
51.8
42.4
Minor 5ss
25.7
-2.8
3.9
35.6
41.4
Minor BPS
40.7
-0.6
2.2
56.91
44.6

Associated Gene:

Gene:
PDZK1
Ensembl Gene ID:
ENSAPLG00000008849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019089
95364328 - 95369517
5190