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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95367945_95368256_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95367945 - 95368256
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCTC
5'SS Class:
major
3'SS Sequence:
TTCTTCACTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ACTTTCTTCACT
Flanking Amino Acid:
MFVDKEEHTQVVEIVKNSGK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
69.7
41.2
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
83.3
0.75
0.8
77.5
29.8
Minor 5ss
37.1
-1.5
3.3
52.9
44.2
Minor BPS
67.3
0.63
1.7
81.49
40.5

Associated Gene:

Gene:
PDZK1
Ensembl Gene ID:
ENSAPLG00000008849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037302
95362308 - 95368466
6159
ENSAPLT00000028959
95362308 - 95372596
10289
ENSAPLT00000024924
95363228 - 95368466
5239
ENSAPLT00000009218
95363334 - 95368466
5133
ENSAPLT00000046899
95363334 - 95368466
5133