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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95368467_95369493_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
95368467 - 95369493
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTATGCC
5'SS Class:
major
3'SS Sequence:
CTGTTTGGTAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TCACACTTATCT
Flanking Amino Acid:
MAHSHCQQMTSVLHPREC
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
64.3
33.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
51
0.02
1.8
60.2
44.9
Minor 5ss
33.9
-1.8
3.2
44.1
43.8
Minor BPS
54
0.21
1.8
71.59
44.6

Associated Gene:

Gene:
PDZK1
Ensembl Gene ID:
ENSAPLG00000008849
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019089
95364328 - 95369517
5190