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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95399783_95401245_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95399783 - 95401245
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTATGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATGT
Flanking Amino Acid:
FLIFSLVEGSAYNIVNVEAG
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.5
0.78
0.8
81.9
28.9
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
60.6
0.41
1.9
80.05
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009229
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009599
95396671 - 95403494
6824