Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95401552_95403180_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

95401552 - 95403180

Intron Length:

1629

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGACGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAACAT

U12 Branch Point Sequence:

TGAACTAGAATT

Flanking Amino Acid:

FHFSSSLSVIVPPTVTLTSD

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

69.9

41.1

Major BPS

0.52

1.1

77.7

35.3

Major PPT

92.8

0.96

0.6

88.9

20.3

Minor 5ss

32.3

-2

3.1

42.6

44.3

Minor BPS

47.3

-0.1

1.7

64.64

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009229

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009599

95396671 - 95403494

6824