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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95732446_95735162_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
95732446 - 95735162
Intron Length:
2717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
TGTCCCTTTATC
Flanking Amino Acid:
ERKRKRRTTISIAAKEALER
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
79.5
0.66
0.8
72.6
36.7
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
64.8
0.45
1.6
73.26
37.4

Associated Gene:

Gene:
POU1F1
Ensembl Gene ID:
ENSAPLG00000009241
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009641
95727361 - 95735376
8016