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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95741935_95742103_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95741935 - 95742103
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTCTTTTGACT
Flanking Amino Acid:
DEIGIEISGKMAKAPSAARG
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.2
0.7
0.7
73.6
31.4
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
69.6
0.7
1.1
82.22
32.4

Associated Gene:

Gene:
CHMP2B
Ensembl Gene ID:
ENSAPLG00000009383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009787
95740821 - 95751066
10246