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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95742211_95743061_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95742211 - 95743061
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCTTTGAAG
Flanking Amino Acid:
NMKMEMTEEMINDTLDDIFD
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
75.2
35.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.7
0.78
0.9
87.1
23.9
Minor 5ss
44.1
-0.6
2.8
56.3
41.9
Minor BPS
70.8
0.51
1.4
75.57
36.2

Associated Gene:

Gene:
CHMP2B
Ensembl Gene ID:
ENSAPLG00000009383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009787
95740821 - 95751066
10246