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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95743165_95745730_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95743165 - 95745730
Intron Length:
2566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TCAATTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
MAGAMSTTAKTMQAVNKKMD
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.6
38.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.6
0.46
0.9
70.6
39.6
Minor 5ss
38.8
-1.3
3.3
50.1
40.9
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
CHMP2B
Ensembl Gene ID:
ENSAPLG00000009383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009787
95740821 - 95751066
10246