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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95745926_95748079_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95745926 - 95748079
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
AALEKQEKQLELEIKKMAKT
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
CHMP2B
Ensembl Gene ID:
ENSAPLG00000009383
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009787
95740821 - 95751066
10246