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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95753037_95754081_F

Intron Information:

Intron Rank:
138176
Intron Class:
major
Intron Phase:
Intron Coordinates:
95753037 - 95754081
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTATGCCT
5'SS Class:
major
3'SS Sequence:
CTTCATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCACCTTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
61
43.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.8
0.74
0.8
76.1
32.2
Minor 5ss
29.8
-2.3
3.1
41.1
44.7
Minor BPS
48.8
-0
1.8
66.48
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046798
95752761 - 95758523
5763