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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_957599_957728_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
957599 - 957728
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTATTTTCATCT
Flanking Amino Acid:
SPCQAFEQSQYYVYEVSDGS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
100
1.24
0.5
100
0
Major PPT
73.9
0.54
0.7
66.3
30
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
49.7
0.06
1.8
69.37
41.6

Associated Gene:

Gene:
TASOR2
Ensembl Gene ID:
ENSAPLG00000007418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007716
946048 - 979990
33943