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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_957969_958072_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
957969 - 958072
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCCAGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTTCTGAGCC
Flanking Amino Acid:
RESLPEPNHKAFYCPWRGQL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
71
0.47
0.9
67.4
33.9
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
65.3
0.46
1.7
79.1
36

Associated Gene:

Gene:
TASOR2
Ensembl Gene ID:
ENSAPLG00000007418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007716
946048 - 979990
33943