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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95854766_95943255_F

Intron Information:

Intron Rank:
140027
Intron Class:
major
Intron Phase:
Intron Coordinates:
95854766 - 95943255
Intron Length:
88490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.5
0.78
0.8
85.3
28.3
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
64.8
0.55
1.6
77.55
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025279
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020896
95854585 - 95945485
90901