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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95890954_95910420_R

Intron Information:

Intron Rank:
149033
Intron Class:
major
Intron Phase:
Intron Coordinates:
95890954 - 95910420
Intron Length:
19467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTCCCTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
66.3
0.37
0.9
61.9
32.5
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
60.2
0.3
1.7
69.84
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027649
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047462
95890089 - 95911044
20956