About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95921357_95921727_F

Intron Information:

Intron Rank:
135237
Intron Class:
major
Intron Phase:
Intron Coordinates:
95921357 - 95921727
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCCTCCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.3
0.61
0.8
74.5
35.4
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
75.8
0.89
1.3
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022752
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044429
95921280 - 95923196
1917