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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95976872_95998253_F

Intron Information:

Intron Rank:
130751
Intron Class:
major
Intron Phase:
Intron Coordinates:
95976872 - 95998253
Intron Length:
21382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGATAAA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGTTTGTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
72.6
33.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
27.6
-2.6
2.9
32.2
42.5
Minor BPS
49.7
0.06
2.3
75.86
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020186
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018793
95973315 - 95999554
26240