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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_95977112_95982678_R

Intron Information:

Intron Rank:
145070
Intron Class:
major
Intron Phase:
Intron Coordinates:
95977112 - 95982678
Intron Length:
5567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGGGAT
U12 Branch Point Sequence:
GATTTGGGAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
44
-0.3
1.4
36.8
42.3
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
35.3
-1
2.5
54.09
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025448
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018243
95959361 - 95983241
23881