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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_96059198_96060699_F

Intron Information:

Intron Rank:
130838
Intron Class:
major
Intron Phase:
Intron Coordinates:
96059198 - 96060699
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATCCACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.59
1
70.4
39.6
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
50.3
0.09
1.9
71.92
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020244
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037196
96058991 - 96063471
4481