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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_96178488_96220487_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
96178488 - 96220487
Intron Length:
42000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
CTGTATAGGACC
Flanking Amino Acid:
TTSATANSTRDPNALAGQTG
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
82
0.72
0.7
74.7
30.6
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
42.4
-0.6
1.8
51.96
39.5

Associated Gene:

Gene:
CADM2
Ensembl Gene ID:
ENSAPLG00000009459
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009884
96175649 - 96430500
254852