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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9633391_9655217_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9633391 - 9655217
Intron Length:
21827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTCTTTTACA
Flanking Amino Acid:
ASHQWRDEFGNNDIIYYNAK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
91.8
0.94
0.6
87.1
23.5
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
71.5
0.67
1.6
78.96
37.6

Associated Gene:

Gene:
CACNA2D1
Ensembl Gene ID:
ENSAPLG00000003174
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021475
9440165 - 9838442
398278
ENSAPLT00000019885
9440165 - 9838362
398198
ENSAPLT00000045079
9440165 - 9878311
438147
ENSAPLT00000003267
9440165 - 9838495
398331
ENSAPLT00000043964
9440165 - 9878311
438147
ENSAPLT00000022965
9440165 - 9841561
401397