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Intron Name: Anas_platyrhynchos_platyrhynchos_1_9655263_9675570_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9655263 - 9675570

Intron Length:

20308

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTAAAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTTTCTTTAAAA

Flanking Amino Acid:

YYNAKDDQNDPEKNDTESGS

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

83.8

34.5

Major BPS

84.4

0.85

1.1

34.5

Major PPT

68.4

0.42

1.1

72.4

35.9

Minor 5ss

39.9

-1.1

2.9

56.1

41.4

Minor BPS

75.7

0.8

1.3

80.33

35.6

Associated Gene:

Gene:

CACNA2D1

Ensembl Gene ID:

ENSAPLG00000003174

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021475

9440165 - 9838442

398278

ENSAPLT00000019885

9440165 - 9838362

398198

ENSAPLT00000045079

9440165 - 9878311

438147

ENSAPLT00000003267

9440165 - 9838495

398331

ENSAPLT00000043964

9440165 - 9878311

438147

ENSAPLT00000022965

9440165 - 9841561

401397